☰ Navigation Tabs
Human insulin in complex with serotonin and arginine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 5 mM ZnAcetate, 35 mM NaCitrate, 1.1 M NaCl, 0.3M Tris pH 7.5, 40 mM serotonin, 100 mM arginine
Crystal Properties Matthews coefficient Solvent content 2.3 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.31 α = 90 b = 159.31 β = 90 c = 76.5 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 46 98.3 0.999 15.1 5 57913
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.93 89.7 0.69 1.6 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MSO 1.88 45.99 57913 2867 98.35 0.2068 0.2035 0.2118 0.2685 0.2745 RANDOM 41.8276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.3 -0.6 1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.217 r_dihedral_angle_4_deg 19.117 r_dihedral_angle_3_deg 15.195 r_dihedral_angle_1_deg 7.254 r_mcangle_it 5.585 r_mcbond_it 4.018 r_mcbond_other 4.017 r_angle_other_deg 3.85 r_angle_refined_deg 1.851 r_chiral_restr 0.119
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.217 r_dihedral_angle_4_deg 19.117 r_dihedral_angle_3_deg 15.195 r_dihedral_angle_1_deg 7.254 r_mcangle_it 5.585 r_mcbond_it 4.018 r_mcbond_other 4.017 r_angle_other_deg 3.85 r_angle_refined_deg 1.851 r_chiral_restr 0.119 r_bond_refined_d 0.017 r_gen_planes_other 0.013 r_gen_planes_refined 0.009 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5666 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 272
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling MOLREP phasing