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Solution structure of Rtt103 CTD-interacting domain bound to a Ser2Ser7 phosphorylated CTD peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1 mM [U-13C; U-15N] CTD-interacting domain of Rtt103p, 1.5 mM THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER 90% H2O/10% D2O 100 mM 6.8 760 mmHg 298 Bruker AVANCE III 950 2 3D 1H-13C NOESY aliphatic 1 mM [U-13C; U-15N] CTD-interacting domain of Rtt103p, 1.5 mM THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER 90% H2O/10% D2O 100 mM 6.8 760 mmHg 298 Bruker AVANCE III 950 3 3D 1H-13C NOESY aromatic 1 mM [U-13C; U-15N] CTD-interacting domain of Rtt103p, 1.5 mM THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER 90% H2O/10% D2O 100 mM 6.8 760 mmHg 298 Bruker AVANCE III 700 4 3D CBCA(CO)NH 1 mM [U-13C; U-15N] CTD-interacting domain of Rtt103p, 1.5 mM THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER 90% H2O/10% D2O 100 mM 6.8 760 mmHg 298 Bruker AVANCE III 850 5 3D HCCH-TOCSY 1 mM [U-13C; U-15N] CTD-interacting domain of Rtt103p, 1.5 mM THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER 90% H2O/10% D2O 100 mM 6.8 760 mmHg 298 Bruker AVANCE III 950 6 F1-13C/15N-filtered NOESY-[13C,1H]-HSQC 1 mM [U-13C; U-15N] CTD-interacting domain of Rtt103p, 1.5 mM THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER 90% H2O/10% D2O 100 mM 6.8 760 mmHg 298 Bruker AVANCE III 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700 2 Bruker AVANCE III 850 3 Bruker AVANCE III 950
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.2 Bruker Biospin 2 structure calculation CYANA 3.97 Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard 5 collection TopSpin 3.2 Bruker Biospin 6 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman