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Lectin domain of E. coli F9 pilus adhesin FmlH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M Citrate pH2, 1M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.23 44.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.71 α = 66.9 b = 52.73 β = 82.28 c = 62.82 γ = 84.1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2012-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 58 97.8 0.073 8 2.7 95705 35660 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.14 96.8 0.547 2.1 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 57.48 33875 1785 97.85 0.19924 0.19715 0.2034 0.23854 0.2417 RANDOM 43.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.21 1.34 0.29 0.58 -1.31 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.215 r_dihedral_angle_3_deg 14.597 r_dihedral_angle_4_deg 7.832 r_dihedral_angle_1_deg 7.783 r_long_range_B_refined 5.639 r_long_range_B_other 5.495 r_scangle_other 3.098 r_mcangle_it 2.465 r_mcangle_other 2.465 r_scbond_it 2.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.215 r_dihedral_angle_3_deg 14.597 r_dihedral_angle_4_deg 7.832 r_dihedral_angle_1_deg 7.783 r_long_range_B_refined 5.639 r_long_range_B_other 5.495 r_scangle_other 3.098 r_mcangle_it 2.465 r_mcangle_other 2.465 r_scbond_it 2.134 r_scbond_other 1.938 r_angle_refined_deg 1.846 r_mcbond_it 1.629 r_mcbond_other 1.627 r_angle_other_deg 1.364 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.009 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4613 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data scaling PHASER phasing