X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4NNJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62930.2M lithium sulfate, 0.1M bis-tris, 15% peg 3350
Crystal Properties
Matthews coefficientSolvent content
3.1560.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.5α = 90
b = 191.89β = 90
c = 230.197γ = 90
Symmetry
Space GroupP 2 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-05-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7620990.13311.25.682916
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.760.828

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4NNJ2.762078520409399.130.176430.174210.21966RANDOM51.743
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.072.1-2.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.424
r_dihedral_angle_4_deg17.373
r_dihedral_angle_3_deg17.232
r_dihedral_angle_1_deg6.421
r_long_range_B_refined3.915
r_long_range_B_other3.893
r_scangle_other2.289
r_mcangle_it2
r_mcangle_other2
r_angle_refined_deg1.664
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.424
r_dihedral_angle_4_deg17.373
r_dihedral_angle_3_deg17.232
r_dihedral_angle_1_deg6.421
r_long_range_B_refined3.915
r_long_range_B_other3.893
r_scangle_other2.289
r_mcangle_it2
r_mcangle_other2
r_angle_refined_deg1.664
r_scbond_it1.371
r_scbond_other1.37
r_angle_other_deg1.203
r_mcbond_it1.147
r_mcbond_other1.147
r_chiral_restr0.089
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms17657
Nucleic Acid Atoms
Solvent Atoms453
Heterogen Atoms184

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing