X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4NNJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62930.2M lithium sulfate, 0.1M bis-tris, 15% peg 3350
Crystal Properties
Matthews coefficientSolvent content
3.1661.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.048α = 90
b = 194.098β = 90
c = 230.172γ = 90
Symmetry
Space GroupP 2 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 4M2016-02-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-30.9686ESRFMASSIF-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32099.50.10713.37.5143279
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.31.866

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4NNJ2.320135949700699.230.174750.17250.21837RANDOM58.126
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.30.32-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.816
r_dihedral_angle_4_deg21.828
r_dihedral_angle_3_deg17.331
r_long_range_B_refined6.968
r_long_range_B_other6.957
r_dihedral_angle_1_deg6.81
r_scangle_other3.964
r_mcangle_it2.695
r_mcangle_other2.695
r_scbond_it2.505
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.816
r_dihedral_angle_4_deg21.828
r_dihedral_angle_3_deg17.331
r_long_range_B_refined6.968
r_long_range_B_other6.957
r_dihedral_angle_1_deg6.81
r_scangle_other3.964
r_mcangle_it2.695
r_mcangle_other2.695
r_scbond_it2.505
r_scbond_other2.504
r_angle_refined_deg2.216
r_mcbond_it1.722
r_mcbond_other1.715
r_angle_other_deg1.533
r_chiral_restr0.128
r_bond_refined_d0.023
r_gen_planes_refined0.012
r_bond_other_d0.009
r_gen_planes_other0.008
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms17654
Nucleic Acid Atoms
Solvent Atoms991
Heterogen Atoms151

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing