☰ Navigation Tabs
Crystal structure of CGL1 from Crassostrea gigas, mannose-bound form (CGL1/MAN2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9.5 293 30% PEG 3000, 100mM CHES
Crystal Properties Matthews coefficient Solvent content 2.1 41.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.32 α = 90 b = 57.93 β = 90 c = 80.38 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2014-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.9800 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 23.5 89 16.4 7.6 131088
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1 22.39 124314 6598 90.5 0.12338 0.12228 0.1235 0.144 0.1444 RANDOM 10.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.088 r_sphericity_bonded 10.663 r_rigid_bond_restr 6.751 r_long_range_B_refined 4.903 r_long_range_B_other 3.525 r_scangle_other 3.063 r_scbond_it 2.686 r_scbond_other 2.685 r_angle_refined_deg 2.053 r_angle_other_deg 1.145
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.088 r_sphericity_bonded 10.663 r_rigid_bond_restr 6.751 r_long_range_B_refined 4.903 r_long_range_B_other 3.525 r_scangle_other 3.063 r_scbond_it 2.686 r_scbond_other 2.685 r_angle_refined_deg 2.053 r_angle_other_deg 1.145 r_mcangle_it 1.124 r_mcangle_other 1.123 r_mcbond_other 0.947 r_mcbond_it 0.946 r_chiral_restr 0.425 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2246 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling