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Crystal structure of apo-PAS1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294.15 3.0M ammonium phosphate, 0.1M Tris-HCl
Crystal Properties Matthews coefficient Solvent content 1.87 34.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.114 α = 90 b = 49.314 β = 109.22 c = 56.222 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD ADSC QUANTUM 315 2012-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 100 32.94 7.4 23475
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 25 22211 1212 99.44 0.1535 0.14973 0.1641 0.22395 0.2148 RANDOM 16.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.77 -0.42 0.08 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.036 r_dihedral_angle_4_deg 14.819 r_dihedral_angle_3_deg 14.534 r_sphericity_free 14.21 r_rigid_bond_restr 8.15 r_sphericity_bonded 7.668 r_dihedral_angle_1_deg 6.552 r_scbond_it 3.279 r_long_range_B_refined 3.162 r_mcangle_it 2.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.036 r_dihedral_angle_4_deg 14.819 r_dihedral_angle_3_deg 14.534 r_sphericity_free 14.21 r_rigid_bond_restr 8.15 r_sphericity_bonded 7.668 r_dihedral_angle_1_deg 6.552 r_scbond_it 3.279 r_long_range_B_refined 3.162 r_mcangle_it 2.053 r_angle_refined_deg 2.039 r_mcbond_it 1.92 r_chiral_restr 0.156 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1911 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing