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Caldalaklibacillus thermarum F1-ATPase (wild type)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CK3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 295 PEG 4600, PEG 1500, ADP, Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 2.74 55.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.82 α = 90 b = 130.79 β = 107.97 c = 210.39 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 64.3 95.6 0.108 11.6 3.8 145626 55.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 88.9 0.444 3 3.6 19744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ck3 3 62.16 138025 7274 95 0.2051 0.2029 0.205 0.2461 0.2464 RANDOM 50.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.09 0.9 -2.28 3.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.795 r_dihedral_angle_4_deg 17.499 r_dihedral_angle_3_deg 16.077 r_dihedral_angle_1_deg 6.129 r_mcangle_it 4.415 r_mcbond_it 2.71 r_mcbond_other 2.71 r_angle_refined_deg 1.567 r_angle_other_deg 0.987 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.795 r_dihedral_angle_4_deg 17.499 r_dihedral_angle_3_deg 16.077 r_dihedral_angle_1_deg 6.129 r_mcangle_it 4.415 r_mcbond_it 2.71 r_mcbond_other 2.71 r_angle_refined_deg 1.567 r_angle_other_deg 0.987 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49525 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 414
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing Coot model building REFMAC refinement PDB_EXTRACT data extraction