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Crystal structure of a thermostable lipase from Marine Streptomyces
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 0.2M Zn(AC)2, 0.1M imidazole, pH 6.5, 10% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.99 58.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.73 α = 90 b = 90.73 β = 90 c = 70.62 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.2822 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 70.63 100 0.106 0.998 16.2 10.8 14806
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 0.718 0.903 10.9 1433
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 70.63 13955 827 99.98 0.1796 0.178 0.189 0.2058 0.2125 RANDOM 45.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -0.56 -1.11 3.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.132 r_dihedral_angle_3_deg 13.365 r_dihedral_angle_4_deg 13.106 r_dihedral_angle_1_deg 6.105 r_mcangle_it 3.258 r_mcbond_it 2.201 r_mcbond_other 2.196 r_angle_refined_deg 1.36 r_angle_other_deg 0.968 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.132 r_dihedral_angle_3_deg 13.365 r_dihedral_angle_4_deg 13.106 r_dihedral_angle_1_deg 6.105 r_mcangle_it 3.258 r_mcbond_it 2.201 r_mcbond_other 2.196 r_angle_refined_deg 1.36 r_angle_other_deg 0.968 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1903 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 22
Software Software Software Name Purpose MOSFLM data collection Aimless data scaling PHASES phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction