☰ Navigation Tabs
Crystal structure of Cbln1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NN0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.2 M Sodium tartrate dibasic dihydrate, 20% PEG3350, pH 7.3
Crystal Properties Matthews coefficient Solvent content 2.46 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.981 α = 90 b = 82.981 β = 90 c = 50.543 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-325 2014-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9199 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 71.86 94.7 13.1 3.9 9670
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4NN0 2.2 71.86 9140 435 93.78 0.16476 0.16307 0.1748 0.20297 0.2184 RANDOM 35.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.2 0.41 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.73 r_dihedral_angle_4_deg 18.701 r_dihedral_angle_3_deg 15.133 r_long_range_B_refined 8.443 r_long_range_B_other 8.427 r_dihedral_angle_1_deg 7.382 r_scangle_other 6.618 r_scbond_it 4.408 r_scbond_other 4.404 r_mcangle_it 4.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.73 r_dihedral_angle_4_deg 18.701 r_dihedral_angle_3_deg 15.133 r_long_range_B_refined 8.443 r_long_range_B_other 8.427 r_dihedral_angle_1_deg 7.382 r_scangle_other 6.618 r_scbond_it 4.408 r_scbond_other 4.404 r_mcangle_it 4.068 r_mcangle_other 4.068 r_mcbond_it 3.028 r_mcbond_other 3.018 r_angle_refined_deg 1.567 r_angle_other_deg 0.791 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1078 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PHASER phasing