X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3JUA 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.22936% Polyethylene glycol 10000, 0.05M magnesium acetate, 0.1M tri-sodium citrate
Crystal Properties
Matthews coefficientSolvent content
3.8868.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.66α = 90
b = 120.9β = 90
c = 196.58γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102014-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL13C10.975NSRRCBL13C1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.93098.68.36.242312

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3JUA2.93040124213198.490.20340.20040.26013RANDOM52.28
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.32-8.8213.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.973
r_dihedral_angle_4_deg21.031
r_dihedral_angle_3_deg19.25
r_long_range_B_refined11.512
r_long_range_B_other11.512
r_dihedral_angle_1_deg8.399
r_scangle_other6.376
r_mcangle_it6.155
r_mcangle_other6.154
r_scbond_it3.855
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.973
r_dihedral_angle_4_deg21.031
r_dihedral_angle_3_deg19.25
r_long_range_B_refined11.512
r_long_range_B_other11.512
r_dihedral_angle_1_deg8.399
r_scangle_other6.376
r_mcangle_it6.155
r_mcangle_other6.154
r_scbond_it3.855
r_scbond_other3.855
r_mcbond_it3.809
r_mcbond_other3.808
r_angle_refined_deg1.734
r_angle_other_deg1.02
r_chiral_restr0.095
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8130
Nucleic Acid Atoms
Solvent Atoms19
Heterogen Atoms80

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing