X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5G0XPDB ENTRY 5G0X

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.0840.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.495α = 90
b = 81.495β = 90
c = 205.265γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9975.7499.50.1811.215.5482724.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.992.0595.90.344.811.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 5G0X1.9975.7445724243199.490.174840.172620.21723RANDOM17.739
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.02-1.022.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.561
r_dihedral_angle_4_deg16.165
r_dihedral_angle_3_deg12.786
r_dihedral_angle_1_deg5.829
r_long_range_B_refined4.476
r_long_range_B_other4.356
r_scangle_other2.105
r_mcangle_it1.628
r_mcangle_other1.628
r_angle_refined_deg1.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.561
r_dihedral_angle_4_deg16.165
r_dihedral_angle_3_deg12.786
r_dihedral_angle_1_deg5.829
r_long_range_B_refined4.476
r_long_range_B_other4.356
r_scangle_other2.105
r_mcangle_it1.628
r_mcangle_other1.628
r_angle_refined_deg1.323
r_scbond_it1.258
r_scbond_other1.258
r_angle_other_deg0.981
r_mcbond_it0.953
r_mcbond_other0.951
r_chiral_restr0.08
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5671
Nucleic Acid Atoms
Solvent Atoms456
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing