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Pseudomonas aeruginosa HDAH (H143A) unliganded.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5G0X PDB ENTRY 5G0X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.08 40.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.495 α = 90 b = 81.495 β = 90 c = 205.265 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 75.74 99.5 0.18 11.2 15.5 48272 4.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.05 95.9 0.34 4.8 11.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5G0X 1.99 75.74 45724 2431 99.49 0.17484 0.17262 0.1806 0.21723 0.2221 RANDOM 17.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 -1.02 2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.561 r_dihedral_angle_4_deg 16.165 r_dihedral_angle_3_deg 12.786 r_dihedral_angle_1_deg 5.829 r_long_range_B_refined 4.476 r_long_range_B_other 4.356 r_scangle_other 2.105 r_mcangle_it 1.628 r_mcangle_other 1.628 r_angle_refined_deg 1.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.561 r_dihedral_angle_4_deg 16.165 r_dihedral_angle_3_deg 12.786 r_dihedral_angle_1_deg 5.829 r_long_range_B_refined 4.476 r_long_range_B_other 4.356 r_scangle_other 2.105 r_mcangle_it 1.628 r_mcangle_other 1.628 r_angle_refined_deg 1.323 r_scbond_it 1.258 r_scbond_other 1.258 r_angle_other_deg 0.981 r_mcbond_it 0.953 r_mcbond_other 0.951 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5671 Nucleic Acid Atoms Solvent Atoms 456 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing