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Tetrameric complex of Latrophilin 3, Unc5D and FLRT2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FTT PDB ENTRY 5FTT, 5AFB, 4V2C experimental model PDB 5AFB PDB ENTRY 5FTT, 5AFB, 4V2C experimental model PDB 4V2C PDB ENTRY 5FTT, 5AFB, 4V2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 4.33 71.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 292.36 α = 90 b = 292.36 β = 90 c = 291.77 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 6 92.45 99.8 0.23 0.89 75.7 16120 459.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 6 6.15 100 1.5 0.89 74.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5FTT, 5AFB, 4V2C 6.01 206.73 15788 719 97.86 0.2758 0.2757 0.3283 0.2779 0.3068 RANDOM 187.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.598 -2.598 5.1959
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.88 t_omega_torsion 1.42 t_angle_deg 0.86 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.88 t_omega_torsion 1.42 t_angle_deg 0.86 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25542 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 138
Software Software Software Name Purpose BUSTER refinement XDS data reduction XSCALE data scaling PHASER phasing