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2.75 Angstrom resolution crystal structure of uncharacterized protein from Bacillus cereus ATCC 10987
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 Protein (SeMet): 8.9 mg/ml in 10 mM Tris-HCl pH 8.3 0.25 M NaCl, 5 mM BME
Crystallization: The Classics II D7(43): 0.1 M Bis-Tris pH 6.5, 25% (w/v) PEG3350
Cryo: Crystallization condition soak
Crystal Properties Matthews coefficient Solvent content 2.25 45.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.067 α = 90 b = 42.176 β = 92.45 c = 106.032 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 30 100 0.097 31 7.4 16616 69.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.8 100 0.634 3.3 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.75 27.17 15767 836 99.4 0.23319 0.23019 0.2302 0.29052 0.2912 RANDOM 83.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.46 -2.32 2.73 -13.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.412 r_dihedral_angle_4_deg 9.129 r_dihedral_angle_3_deg 7.281 r_angle_refined_deg 1.511 r_dihedral_angle_1_deg 1.267 r_angle_other_deg 0.92 r_chiral_restr 0.102 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.412 r_dihedral_angle_4_deg 9.129 r_dihedral_angle_3_deg 7.281 r_angle_refined_deg 1.511 r_dihedral_angle_1_deg 1.267 r_angle_other_deg 0.92 r_chiral_restr 0.102 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5027 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement BLU-MAX data collection HKL-3000 data scaling HKL-3000 phasing Coot model building ARP model building HKL-3000 data reduction