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Crystal Structure of Beta-Lactamase/D-Alanine Carboxypeptidase from Pseudomonas syringae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 2.0 M Ammonium Sulfate 0.1 M Bis-Tris:HCl pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.28 45.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.869 α = 89.94 b = 72.645 β = 90.01 c = 93.77 γ = 90.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97926 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.5 0.054 12.44 2.2 128402 128402
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 96.2 0.419 2.49 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 36.32 117229 5791 92.8 0.16493 0.16316 0.1674 0.20081 0.2023 RANDOM 24.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 0.1 0.05 -1.78 -3.19 2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.577 r_dihedral_angle_3_deg 14.866 r_dihedral_angle_4_deg 13.216 r_dihedral_angle_1_deg 6.129 r_long_range_B_refined 5.376 r_long_range_B_other 5.345 r_mcangle_it 2.833 r_mcangle_other 2.833 r_scangle_other 2.657 r_mcbond_it 1.626
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.577 r_dihedral_angle_3_deg 14.866 r_dihedral_angle_4_deg 13.216 r_dihedral_angle_1_deg 6.129 r_long_range_B_refined 5.376 r_long_range_B_other 5.345 r_mcangle_it 2.833 r_mcangle_other 2.833 r_scangle_other 2.657 r_mcbond_it 1.626 r_mcbond_other 1.626 r_scbond_it 1.5 r_scbond_other 1.5 r_angle_refined_deg 1.473 r_angle_other_deg 0.972 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11118 Nucleic Acid Atoms Solvent Atoms 510 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing