5EVI
Crystal Structure of Beta-Lactamase/D-Alanine Carboxypeptidase from Pseudomonas syringae
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | beta-Lactamase/D-ala carboxypeptidase | 8069926 | 4002685 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | beta-lactamase/transpeptidase-like | 8069927 | 3001604 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8069927 | 3001604 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8069927 | 3001604 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8069927 | 3001604 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Beta-lactamase_1st | e5eviA2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_1st | ECOD (1.6) |
A | Beta-lactamase_2nd | e5eviA1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_2nd | ECOD (1.6) |
B | Beta-lactamase_1st | e5eviB1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_1st | ECOD (1.6) |
B | Beta-lactamase_2nd | e5eviB2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_2nd | ECOD (1.6) |
C | Beta-lactamase_1st | e5eviC2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_1st | ECOD (1.6) |
C | Beta-lactamase_2nd | e5eviC1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_2nd | ECOD (1.6) |
D | Beta-lactamase_1st | e5eviD2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_1st | ECOD (1.6) |
D | Beta-lactamase_2nd | e5eviD1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Beta-lactamase_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
B | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
C | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
D | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00144 | Beta-lactamase (Beta-lactamase) | Beta-lactamase | This family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. | Domain | |
PF00144 | Beta-lactamase (Beta-lactamase) | Beta-lactamase | This family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. | Domain | |
PF00144 | Beta-lactamase (Beta-lactamase) | Beta-lactamase | This family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. | Domain | |
PF00144 | Beta-lactamase (Beta-lactamase) | Beta-lactamase | This family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Beta-Lactamase/D-Alanine Carboxypeptidase | ||||
Beta-Lactamase/D-Alanine Carboxypeptidase | ||||
Beta-Lactamase/D-Alanine Carboxypeptidase | ||||
Beta-Lactamase/D-Alanine Carboxypeptidase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001466 | Beta-lactamase-related | Domain | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001586 | Beta-lactamase, class-C active site | Active Site | |
IPR050491 | Bacterial Cell Wall Synthesis and Modification | Family | |
IPR001466 | Beta-lactamase-related | Domain | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001586 | Beta-lactamase, class-C active site | Active Site | |
IPR050491 | Bacterial Cell Wall Synthesis and Modification | Family | |
IPR001466 | Beta-lactamase-related | Domain | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001586 | Beta-lactamase, class-C active site | Active Site | |
IPR050491 | Bacterial Cell Wall Synthesis and Modification | Family | |
IPR001466 | Beta-lactamase-related | Domain | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR001586 | Beta-lactamase, class-C active site | Active Site | |
IPR050491 | Bacterial Cell Wall Synthesis and Modification | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
MLY | Parent Component: LYS :  AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 | |
MSE | Parent Component: MET :  AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 | |
MSE | Parent Component: MET :  AA0075 , AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 | |
MSE | Parent Component: MET :  AA0075 , AA0075 , AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 , AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 | |
MSE | Parent Component: MET :  AA0075 , AA0075 , AA0075 , AA0075 |