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Crystal structure of hnRNPA2B1 in complex with RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U1Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 25% PEG3350, 0.1M Tris pH8.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.623 α = 90 b = 46.38 β = 96.02 c = 37.516 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU 2015-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.987 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 28.81 91.89 7.9 2.5 6187
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U1Q 2.58 28.81 5889 299 91.76 0.19387 0.19162 0.1972 0.23624 0.2328 RANDOM 45.201
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 -1.09 1.28 -2.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.183 r_dihedral_angle_4_deg 19.227 r_dihedral_angle_3_deg 16.347 r_dihedral_angle_1_deg 7.489 r_long_range_B_other 7.1 r_long_range_B_refined 7.099 r_scangle_other 5.368 r_mcangle_other 4.476 r_mcangle_it 4.475 r_scbond_it 3.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.183 r_dihedral_angle_4_deg 19.227 r_dihedral_angle_3_deg 16.347 r_dihedral_angle_1_deg 7.489 r_long_range_B_other 7.1 r_long_range_B_refined 7.099 r_scangle_other 5.368 r_mcangle_other 4.476 r_mcangle_it 4.475 r_scbond_it 3.202 r_scbond_other 3.185 r_mcbond_it 2.771 r_mcbond_other 2.754 r_angle_refined_deg 1.615 r_angle_other_deg 1.417 r_chiral_restr 0.095 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1491 Nucleic Acid Atoms 150 Solvent Atoms 11 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-3000 data scaling PHASER phasing