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Laccase from Antrodiella faginea
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.01 M zinc acetate, 0.1M sodium cacodylate, 20% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.75 55.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.15 α = 90 b = 81.54 β = 104.75 c = 78.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2010-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON KURCHATOV SNC BEAMLINE K4.4 0.985 KURCHATOV SNC K4.4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 75.912 89.4 0.06 11.27 2.3 52971 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 77.6 0.335 2.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 75.91 50282 2689 89.62 0.16193 0.16018 0.1611 0.1951 0.197 RANDOM 19.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -0.98 -1.02 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.028 r_dihedral_angle_4_deg 18.383 r_dihedral_angle_3_deg 12.182 r_sphericity_bonded 10.931 r_dihedral_angle_1_deg 6.666 r_long_range_B_refined 4.218 r_mcangle_it 2.258 r_scbond_it 2.046 r_angle_refined_deg 1.81 r_mcbond_it 1.512
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.028 r_dihedral_angle_4_deg 18.383 r_dihedral_angle_3_deg 12.182 r_sphericity_bonded 10.931 r_dihedral_angle_1_deg 6.666 r_long_range_B_refined 4.218 r_mcangle_it 2.258 r_scbond_it 2.046 r_angle_refined_deg 1.81 r_mcbond_it 1.512 r_chiral_restr 0.13 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3828 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling MOLREP phasing