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Crystal structure of human Hsf1 with Satellite III repeat DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5D5U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 31 % PEG-4000, 0.09 M Mg-acetate
Crystal Properties Matthews coefficient Solvent content 4.69 73.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.813 α = 90 b = 112.678 β = 92.56 c = 39.865 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 39.83 99.6 0.13 0.069 0.994 9.3 4.4 15087 28.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.66 97.2 0.669 0.375 0.676 2.2 4.1 1821
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5D5U 2.55 30 14354 731 99.68 0.1921 0.19 0.1968 0.2335 0.2394 RANDOM 32.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.7 -0.32 -0.9 -1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.73 r_dihedral_angle_4_deg 23.913 r_dihedral_angle_3_deg 17.494 r_dihedral_angle_1_deg 6.116 r_angle_refined_deg 1.397 r_angle_other_deg 1.127 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.73 r_dihedral_angle_4_deg 23.913 r_dihedral_angle_3_deg 17.494 r_dihedral_angle_1_deg 6.116 r_angle_refined_deg 1.397 r_angle_other_deg 1.127 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1669 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 488
Software Software Software Name Purpose Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction