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Crystal structure of the CupB6 tip adhesin from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 291.15 1.6M NaH2PO4, 400 mM KH2PO4, 100mM phosphate citrate
Crystal Properties Matthews coefficient Solvent content 4.07 69.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 358.813 α = 90 b = 88.93 β = 112.94 c = 172.974 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.92002, 0.97903, 0.97957, 0.96757 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.77 97.29 96.6 0.098 0.97 8.9 3.4 416327 57.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.77 2.84 96.9 0.857 0.578 1.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.77 97.29 117132 6115 96.17 0.23983 0.23844 0.2323 0.26645 0.2614 RANDOM 55.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.04 0.16 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.6 r_dihedral_angle_3_deg 18.675 r_dihedral_angle_4_deg 18.567 r_long_range_B_refined 10.974 r_long_range_B_other 10.973 r_scangle_other 7.112 r_mcangle_it 6.757 r_mcangle_other 6.757 r_dihedral_angle_1_deg 5.135 r_scbond_it 4.655
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.6 r_dihedral_angle_3_deg 18.675 r_dihedral_angle_4_deg 18.567 r_long_range_B_refined 10.974 r_long_range_B_other 10.973 r_scangle_other 7.112 r_mcangle_it 6.757 r_mcangle_other 6.757 r_dihedral_angle_1_deg 5.135 r_scbond_it 4.655 r_scbond_other 4.652 r_mcbond_it 4.278 r_mcbond_other 4.278 r_angle_other_deg 3.744 r_angle_refined_deg 1.746 r_chiral_restr 0.087 r_bond_refined_d 0.013 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20683 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling XDS data reduction SHARP phasing