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Lucilia cuprina alpha esterase 7: Gly137Asp
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FNG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 290 100 mM
sodium-acetate (pH 4.6) and 20% PEG 2K MME
Crystal Properties Matthews coefficient Solvent content 2.19 43.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.674 α = 90 b = 102.583 β = 90 c = 225.476 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.8726 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 56.37 95.4 0.132 7.7 3.9 44051
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.06 98.2 0.906 1.4 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4FNG 2.01 56.37 35283 1867 95.42 0.18765 0.18473 0.1924 0.24451 0.245 RANDOM 27.203
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.03 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.369 r_dihedral_angle_4_deg 17.518 r_dihedral_angle_3_deg 14.071 r_dihedral_angle_1_deg 6.521 r_long_range_B_refined 5.193 r_long_range_B_other 5.162 r_scangle_other 3.93 r_mcangle_it 2.889 r_mcangle_other 2.889 r_scbond_it 2.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.369 r_dihedral_angle_4_deg 17.518 r_dihedral_angle_3_deg 14.071 r_dihedral_angle_1_deg 6.521 r_long_range_B_refined 5.193 r_long_range_B_other 5.162 r_scangle_other 3.93 r_mcangle_it 2.889 r_mcangle_other 2.889 r_scbond_it 2.532 r_scbond_other 2.532 r_mcbond_other 1.944 r_mcbond_it 1.943 r_angle_refined_deg 1.666 r_angle_other_deg 0.877 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4561 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Aimless data scaling