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Crystal structure of mtPAP in complex with UTP
Crystallization Crystal Properties Matthews coefficient Solvent content 2.14 42.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.71 α = 90 b = 93.83 β = 90 c = 192.436 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 40 99.8 0.07 0.99 16.1 5.3 28933 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 100 0.9 0.53 1.9 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.75 39.65 27409 1468 99.77 0.21822 0.21629 0.2139 0.25499 0.2471 RANDOM 82.991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.33 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.786 r_dihedral_angle_3_deg 14.451 r_dihedral_angle_4_deg 12.466 r_mcangle_it 5.041 r_dihedral_angle_1_deg 4.867 r_mcbond_it 3.032 r_mcbond_other 3.032 r_scbond_it 3.004 r_angle_refined_deg 0.925 r_angle_other_deg 0.784
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.786 r_dihedral_angle_3_deg 14.451 r_dihedral_angle_4_deg 12.466 r_mcangle_it 5.041 r_dihedral_angle_1_deg 4.867 r_mcbond_it 3.032 r_mcbond_other 3.032 r_scbond_it 3.004 r_angle_refined_deg 0.925 r_angle_other_deg 0.784 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7436 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling MOLREP phasing