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N-terminal thioester domain of protein F2 like fibronectin-binding protein from Streptococcus pneumoniae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.02 M SODIUM L-GLUTAMATE, 0.02 M DL-ALANINE, 0.02 M GLYCINE, 0.02 M DL-LYSINE, 0.02 M DL-SERINE, 0.1 M MES/IMIDAZOLE PH 6.5, 10% PEG 4000, 20% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.11 41.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.86 α = 90 b = 59.86 β = 90 c = 121.66 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2012-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 42.67 93.6 0.05 33.8 23.9 51670 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 62.7 0.3 7.4 11.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.3 53.71 48978 2631 93.49 0.12087 0.11926 0.1348 0.1514 0.1654 RANDOM 13.149
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 34.003 r_dihedral_angle_2_deg 32.647 r_dihedral_angle_4_deg 19.382 r_sphericity_bonded 11.742 r_dihedral_angle_3_deg 11.12 r_dihedral_angle_1_deg 6.184 r_scbond_it 2.784 r_rigid_bond_restr 2.391 r_mcangle_it 2.072 r_mcbond_it 1.584
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 34.003 r_dihedral_angle_2_deg 32.647 r_dihedral_angle_4_deg 19.382 r_sphericity_bonded 11.742 r_dihedral_angle_3_deg 11.12 r_dihedral_angle_1_deg 6.184 r_scbond_it 2.784 r_rigid_bond_restr 2.391 r_mcangle_it 2.072 r_mcbond_it 1.584 r_mcbond_other 1.564 r_angle_refined_deg 1.505 r_angle_other_deg 0.85 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1760 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHENIX phasing