4UHX

Human aldehyde oxidase in complex with phthalazine and thioridazine


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3ZYVPDB ENTRY 3ZYV

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.4549.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.732α = 90
b = 148.732β = 90
c = 132.808γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.774.499.80.0322.212414072
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.8198.70.591.66.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3ZYV2.7105.1739322208599.790.197740.195260.24408RANDOM77.722
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.84-0.841.68
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.31
r_dihedral_angle_3_deg13.343
r_dihedral_angle_4_deg13.302
r_dihedral_angle_1_deg5.858
r_long_range_B_refined3.299
r_long_range_B_other3.299
r_mcangle_it1.664
r_mcangle_other1.664
r_scangle_other1.389
r_angle_refined_deg1.164
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.31
r_dihedral_angle_3_deg13.343
r_dihedral_angle_4_deg13.302
r_dihedral_angle_1_deg5.858
r_long_range_B_refined3.299
r_long_range_B_other3.299
r_mcangle_it1.664
r_mcangle_other1.664
r_scangle_other1.389
r_angle_refined_deg1.164
r_angle_other_deg0.944
r_mcbond_it0.933
r_mcbond_other0.933
r_scbond_it0.793
r_scbond_other0.792
r_chiral_restr0.065
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10000
Nucleic Acid Atoms
Solvent Atoms60
Heterogen Atoms163

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing