☰ Navigation Tabs
Human aldehyde oxidase in complex with phthalazine and thioridazine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZYV PDB ENTRY 3ZYV
Crystallization Crystal Properties Matthews coefficient Solvent content 2.45 49.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.732 α = 90 b = 148.732 β = 90 c = 132.808 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 74.4 99.8 0.03 22.2 12 41407 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.81 98.7 0.59 1.6 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZYV 2.7 105.17 39322 2085 99.79 0.19774 0.19526 0.2319 0.24408 0.2698 RANDOM 77.722
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 -0.84 1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.31 r_dihedral_angle_3_deg 13.343 r_dihedral_angle_4_deg 13.302 r_dihedral_angle_1_deg 5.858 r_long_range_B_refined 3.299 r_long_range_B_other 3.299 r_mcangle_it 1.664 r_mcangle_other 1.664 r_scangle_other 1.389 r_angle_refined_deg 1.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.31 r_dihedral_angle_3_deg 13.343 r_dihedral_angle_4_deg 13.302 r_dihedral_angle_1_deg 5.858 r_long_range_B_refined 3.299 r_long_range_B_other 3.299 r_mcangle_it 1.664 r_mcangle_other 1.664 r_scangle_other 1.389 r_angle_refined_deg 1.164 r_angle_other_deg 0.944 r_mcbond_it 0.933 r_mcbond_other 0.933 r_scbond_it 0.793 r_scbond_other 0.792 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10000 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 163
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing