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Crystal structure of the PmFTN variant E44Q soaked in iron (overnight)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4IWJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 Sodiaum acetate pH 5.5, Ammonium sulfate, NaCl
Crystal Properties Matthews coefficient Solvent content 3 58.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.25 α = 90 b = 175.25 β = 90 c = 175.25 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.61 100 0.11 0.11 0.12 0.032 15.9 13.4 140366 140366
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.977 0.035 0.011 2.5 12.1 20385
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4IWJ 1.9 48.61 133305 7045 99.98 0.1641 0.1623 0.1724 0.1988 0.2071 RANDOM 27.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.722 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 14.074 r_dihedral_angle_1_deg 5.095 r_mcangle_it 3.314 r_mcbond_it 2.466 r_mcbond_other 2.465 r_angle_refined_deg 1.752 r_angle_other_deg 0.916 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.722 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 14.074 r_dihedral_angle_1_deg 5.095 r_mcangle_it 3.314 r_mcbond_it 2.466 r_mcbond_other 2.465 r_angle_refined_deg 1.752 r_angle_other_deg 0.916 r_chiral_restr 0.11 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10040 Nucleic Acid Atoms Solvent Atoms 875 Heterogen Atoms 31
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction