☰ Navigation Tabs
Crystal structure of OXA-58, a carbapenem hydrolyzing Class D beta-lactamase from Acinetobacter baumanii.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M Tris base/Hydrochloric acid (pH 8.0), 30% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.84 33.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.074 α = 90 b = 67.038 β = 90 c = 93.515 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2014-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 54.48 95.72 0.11 11.26 3.1 9500
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.37 2.46 73.1 0.36 2.75 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.37 54.48 8536 964 95.65 0.19776 0.19292 0.23967 0.2239 RANDOM 43.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 0.02 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.892 r_dihedral_angle_4_deg 10.788 r_dihedral_angle_3_deg 8.934 r_long_range_B_refined 3.457 r_long_range_B_other 3.389 r_dihedral_angle_1_deg 3.354 r_angle_refined_deg 1.732 r_angle_other_deg 1.34 r_mcangle_it 0.884 r_mcangle_other 0.883
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.892 r_dihedral_angle_4_deg 10.788 r_dihedral_angle_3_deg 8.934 r_long_range_B_refined 3.457 r_long_range_B_other 3.389 r_dihedral_angle_1_deg 3.354 r_angle_refined_deg 1.732 r_angle_other_deg 1.34 r_mcangle_it 0.884 r_mcangle_other 0.883 r_scangle_other 0.723 r_mcbond_it 0.503 r_mcbond_other 0.503 r_scbond_it 0.402 r_scbond_other 0.402 r_chiral_restr 0.05 r_bond_refined_d 0.014 r_bond_other_d 0.003 r_gen_planes_refined 0.002 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1943 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing