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Crystal structure of addiction module from Mycobacterial species
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M sodium citrate tribasic dihydrate pH 5.6, 1.0M ammonium phosphate monobasic
Crystal Properties Matthews coefficient Solvent content 3.31 62.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.381 α = 90 b = 96.381 β = 90 c = 232.788 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0000 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40.66 99.3 40.96 7.7 35181
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 40.66 33411 1749 99.39 0.20736 0.20578 0.2066 0.23814 0.2388 RANDOM 60.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 24.9 24.9 -49.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.354 r_dihedral_angle_3_deg 14.594 r_dihedral_angle_4_deg 14.133 r_long_range_B_refined 8.776 r_long_range_B_other 8.776 r_mcangle_other 6.625 r_mcangle_it 6.624 r_dihedral_angle_1_deg 6.314 r_scangle_other 6.014 r_mcbond_it 4.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.354 r_dihedral_angle_3_deg 14.594 r_dihedral_angle_4_deg 14.133 r_long_range_B_refined 8.776 r_long_range_B_other 8.776 r_mcangle_other 6.625 r_mcangle_it 6.624 r_dihedral_angle_1_deg 6.314 r_scangle_other 6.014 r_mcbond_it 4.303 r_mcbond_other 4.303 r_scbond_it 3.94 r_scbond_other 3.939 r_angle_refined_deg 1.212 r_angle_other_deg 0.755 r_chiral_restr 0.067 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4944 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing