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Structure of Fungal beta-mannosidase (GH2) from Trichoderma harzianum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 26% PEG 400, 0.13 M CDCL2 AND 0.1 M SODIUM ACETATE PH 4.7
Crystal Properties Matthews coefficient Solvent content 2.06 40.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.161 α = 90 b = 165.631 β = 90 c = 123.562 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 98.94 99.6 0.24 4.34 7.8 117122 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 96.8 1.25 2.1 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 117.23 111251 5871 99.56 0.17966 0.17851 0.1803 0.20113 0.2031 RANDOM 50.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 -1.17 3.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_dihedral_angle_4_deg 16.667 r_dihedral_angle_3_deg 15.353 r_dihedral_angle_1_deg 4.097 r_angle_other_deg 2.896 r_scbond_it 2.841 r_mcangle_it 2.664 r_mcbond_it 1.77 r_mcbond_other 1.77 r_angle_refined_deg 1.731
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_dihedral_angle_4_deg 16.667 r_dihedral_angle_3_deg 15.353 r_dihedral_angle_1_deg 4.097 r_angle_other_deg 2.896 r_scbond_it 2.841 r_mcangle_it 2.664 r_mcbond_it 1.77 r_mcbond_other 1.77 r_angle_refined_deg 1.731 r_chiral_restr 0.118 r_bond_refined_d 0.013 r_gen_planes_other 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14468 Nucleic Acid Atoms Solvent Atoms 1500 Heterogen Atoms 1003
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing