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Crystal structure of the ternary RGMB-BMP2-NEO1 complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M TRIS-HCL PH 8.5, 1.5 M AMMONIUM SULPHATE, 12% (V/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 4.43 72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.08 α = 90 b = 120.08 β = 90 c = 204.09 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.15 103.5 98.6 0.08 20.2 8.7 26245 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.15 3.23 96.1 1.5 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.15 50.01 24934 1248 98.58 0.19779 0.19591 0.2028 0.23609 0.2396 RANDOM 133.545
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.46 5.46 -10.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.209 r_dihedral_angle_4_deg 23.287 r_dihedral_angle_3_deg 16.65 r_long_range_B_refined 13.429 r_long_range_B_other 13.428 r_scangle_other 8.486 r_mcangle_other 7.399 r_mcangle_it 7.398 r_dihedral_angle_1_deg 6.982 r_scbond_it 5.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.209 r_dihedral_angle_4_deg 23.287 r_dihedral_angle_3_deg 16.65 r_long_range_B_refined 13.429 r_long_range_B_other 13.428 r_scangle_other 8.486 r_mcangle_other 7.399 r_mcangle_it 7.398 r_dihedral_angle_1_deg 6.982 r_scbond_it 5.274 r_scbond_other 5.272 r_mcbond_it 4.527 r_mcbond_other 4.517 r_angle_refined_deg 1.683 r_angle_other_deg 1.127 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4238 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing