☰ Navigation Tabs
Structure of tau peptide in complex with Tau5 antibody Fab fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 12E8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.2M lithium sulphate, 30% PEG 4000, 0.1M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.6 52.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.865 α = 90 b = 59.732 β = 112.76 c = 71.041 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 1.2669 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 65.51 94.6 0.056 10.71 3.18 60326
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 77.8 0.858 1.06 2.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 12E8 1.6 65.51 57450 3041 94.93 0.1535 0.15118 0.1661 0.19715 0.2099 RANDOM 26.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 -0.51 1.01 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.668 r_sphericity_free 25.065 r_dihedral_angle_4_deg 15.52 r_dihedral_angle_3_deg 12.396 r_sphericity_bonded 8.35 r_dihedral_angle_1_deg 6.463 r_rigid_bond_restr 5.474 r_long_range_B_refined 4.807 r_long_range_B_other 4.807 r_scangle_other 3.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.668 r_sphericity_free 25.065 r_dihedral_angle_4_deg 15.52 r_dihedral_angle_3_deg 12.396 r_sphericity_bonded 8.35 r_dihedral_angle_1_deg 6.463 r_rigid_bond_restr 5.474 r_long_range_B_refined 4.807 r_long_range_B_other 4.807 r_scangle_other 3.729 r_mcangle_it 3.528 r_mcangle_other 3.528 r_scbond_it 3.243 r_scbond_other 3.241 r_mcbond_it 2.884 r_mcbond_other 2.884 r_angle_refined_deg 1.37 r_angle_other_deg 0.75 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3463 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction PHASER phasing XSCALE data scaling