☰ Navigation Tabs
OXA-48 in complex with Avibactam at pH 8.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HBR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298.15 0.1M TRIS pH 8.5, 20% ethanol, 2mM avibactam, VAPOR DIFFUSION, SITTING DROP, temperature 298.15K
Crystal Properties Matthews coefficient Solvent content 2.41 49.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.039 α = 90 b = 142.039 β = 90 c = 50.401 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2013-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 1.00 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 52.66 99.2 76871 76256
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3HBR 2 52.66 73039 72459 3823 99.27 0.19321 0.19167 0.1989 0.22293 0.2262 RANDOM 34.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 -0.73 -1.47 4.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.733 r_dihedral_angle_4_deg 17.131 r_dihedral_angle_3_deg 14.882 r_long_range_B_other 7.083 r_long_range_B_refined 7.077 r_scangle_other 6.237 r_dihedral_angle_1_deg 4.573 r_scbond_it 4.302 r_scbond_other 4.299 r_angle_other_deg 3.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.733 r_dihedral_angle_4_deg 17.131 r_dihedral_angle_3_deg 14.882 r_long_range_B_other 7.083 r_long_range_B_refined 7.077 r_scangle_other 6.237 r_dihedral_angle_1_deg 4.573 r_scbond_it 4.302 r_scbond_other 4.299 r_angle_other_deg 3.757 r_mcangle_it 3.723 r_mcangle_other 3.723 r_mcbond_it 2.793 r_mcbond_other 2.793 r_angle_refined_deg 2.421 r_chiral_restr 0.152 r_gen_planes_other 0.031 r_bond_refined_d 0.022 r_gen_planes_refined 0.016 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7935 Nucleic Acid Atoms Solvent Atoms 385 Heterogen Atoms 68
Software Software Software Name Purpose MxDC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling