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X-ray structure of the ROQ domain from murine Roquin-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 300 mM Na Tartrate, 100 mM Bis-Tris-Propane, 20% PEG3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.22 α = 90 b = 79.51 β = 90 c = 184.91 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.90745 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 50 99.8 0.137 9.7 30555 30555
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 99.9 0.621 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.94 92.46 29304 29304 1251 99.85 0.16327 0.16141 0.1728 0.20556 0.2091 RANDOM 24.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.13 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.494 r_dihedral_angle_4_deg 18.968 r_dihedral_angle_3_deg 14.3 r_long_range_B_refined 6.957 r_long_range_B_other 6.697 r_dihedral_angle_1_deg 6.105 r_scangle_other 3.389 r_mcangle_it 2.52 r_mcangle_other 2.519 r_scbond_it 2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.494 r_dihedral_angle_4_deg 18.968 r_dihedral_angle_3_deg 14.3 r_long_range_B_refined 6.957 r_long_range_B_other 6.697 r_dihedral_angle_1_deg 6.105 r_scangle_other 3.389 r_mcangle_it 2.52 r_mcangle_other 2.519 r_scbond_it 2.08 r_scbond_other 2.08 r_angle_refined_deg 1.88 r_mcbond_it 1.633 r_mcbond_other 1.633 r_angle_other_deg 0.944 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2515 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 4
Software Software Software Name Purpose DNA data collection Auto-Rickshaw phasing REFMAC refinement XDS data reduction SCALA data scaling