X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4Q97PDB ENTRY 4Q97

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52930.1 M Tris-HCl, 30% PEG10000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9737.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.84α = 90
b = 48.45β = 110.31
c = 47.19γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2009-05-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.51096.50.03616.53.4285142750622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.695.50.3283.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4Q971.51022750626130137696.610.1840.181690.179810.21657RANDOM30.095
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.060.481.94-1.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.847
r_sphericity_free22.013
r_dihedral_angle_3_deg13.431
r_dihedral_angle_4_deg9.546
r_sphericity_bonded7.51
r_dihedral_angle_1_deg5.446
r_long_range_B_refined3.613
r_long_range_B_other3.515
r_rigid_bond_restr3.388
r_scangle_other2.973
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.847
r_sphericity_free22.013
r_dihedral_angle_3_deg13.431
r_dihedral_angle_4_deg9.546
r_sphericity_bonded7.51
r_dihedral_angle_1_deg5.446
r_long_range_B_refined3.613
r_long_range_B_other3.515
r_rigid_bond_restr3.388
r_scangle_other2.973
r_scbond_it2.755
r_scbond_other2.754
r_mcangle_it2.741
r_mcangle_other2.74
r_mcbond_it2.311
r_mcbond_other2.306
r_angle_refined_deg1.236
r_angle_other_deg0.678
r_chiral_restr0.069
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1490
Nucleic Acid Atoms
Solvent Atoms140
Heterogen Atoms

Software

Software
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling