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Phosphate binding protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TWY PDB entry 1TWY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 293 2.5 M Na Malonate, 0.1 M Tris, pH 8.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.91 35.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.444 α = 90 b = 148.092 β = 90 c = 216.452 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9508 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 122.22 98 0.1466 0.1523 11.89 13.6 183396 186078 2 2 21.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.59 91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1TWY 1.5 122.2 182512 173385 9126 98.34 0.19144 0.19016 0.1914 0.21571 0.2178 RANDOM 32.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 1.16 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.166 r_dihedral_angle_3_deg 13.867 r_dihedral_angle_4_deg 13.711 r_long_range_B_other 12.307 r_long_range_B_refined 12.27 r_scangle_other 11 r_scbond_other 8.065 r_scbond_it 8.052 r_dihedral_angle_1_deg 5.954 r_mcangle_it 4.455
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.166 r_dihedral_angle_3_deg 13.867 r_dihedral_angle_4_deg 13.711 r_long_range_B_other 12.307 r_long_range_B_refined 12.27 r_scangle_other 11 r_scbond_other 8.065 r_scbond_it 8.052 r_dihedral_angle_1_deg 5.954 r_mcangle_it 4.455 r_mcangle_other 4.455 r_mcbond_other 3.496 r_mcbond_it 3.495 r_angle_refined_deg 1.639 r_angle_other_deg 1.385 r_chiral_restr 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.008 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9024 Nucleic Acid Atoms Solvent Atoms 447 Heterogen Atoms 24
Software Software Software Name Purpose EDNA data collection BALBES phasing REFMAC refinement XDS data reduction XDS data scaling