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The structure of aquaporin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 30% PEG 400, 0.1M sodium chloride, 0.1M MOPS, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.1 60.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.717 α = 90 b = 95.717 β = 90 c = 79.058 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97920 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.05 79.07 99.68 38.8 13.8 7130 7153 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.05 3.29 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.05 79.07 7153 7130 300 99.68 0.25893 0.25707 0.2632 0.29897 0.3041 RANDOM 150.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.58 -2.58 5.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.367 r_dihedral_angle_3_deg 16.981 r_dihedral_angle_4_deg 14.057 r_long_range_B_refined 7.081 r_long_range_B_other 7.08 r_dihedral_angle_1_deg 4.485 r_mcangle_it 4.406 r_mcangle_other 4.404 r_scangle_other 3.792 r_mcbond_other 2.745
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.367 r_dihedral_angle_3_deg 16.981 r_dihedral_angle_4_deg 14.057 r_long_range_B_refined 7.081 r_long_range_B_other 7.08 r_dihedral_angle_1_deg 4.485 r_mcangle_it 4.406 r_mcangle_other 4.404 r_scangle_other 3.792 r_mcbond_other 2.745 r_mcbond_it 2.744 r_scbond_it 2.281 r_scbond_other 2.28 r_angle_refined_deg 0.693 r_angle_other_deg 0.498 r_chiral_restr 0.038 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1890 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling