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Crystal structure of Tse3-Tsi3 complex with calcium ion
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4N7S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 0.2M Ammonium acetate, 0.01M calcium chloride,0.05M Sodium cacodylate pH 6.5, 10% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.99 58.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.236 α = 90 b = 95.317 β = 90 c = 160.762 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.9 34326
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 4N7S 2.8 41.384 34326 33266 1681 96.31 0.205 0.2017 0.1969 0.2688 0.2614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2956 16.8288 -15.5332
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.88 f_angle_d 1.156 f_chiral_restr 0.074 f_bond_d 0.009 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8028 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 8
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling