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Crystal structure of human CTNNBL1(residues 33~563)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MFU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 295 PEG8000, CAPs, NaCl, pH 9.5, vapor diffusion, hanging drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.33 63.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.037 α = 90 b = 90.037 β = 90 c = 175.746 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2009-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97985 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.92 46.88 94.1 0.078 0.062 30.3 7.2 34493 32475 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.92 3.02 77.6 0.266 0.342 2.6 3.1 2693
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4MFU 2.92 46.84 34477 32463 1635 94.12 0.2364 0.2328 0.3053 0.263 RANDOM 88.826
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 -0.77 -0.77 2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.98 r_dihedral_angle_3_deg 22.768 r_dihedral_angle_4_deg 20.865 r_mcangle_it 9.04 r_dihedral_angle_1_deg 7.596 r_mcbond_it 5.798 r_mcbond_other 5.798 r_angle_refined_deg 1.481 r_angle_other_deg 0.864 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.98 r_dihedral_angle_3_deg 22.768 r_dihedral_angle_4_deg 20.865 r_mcangle_it 9.04 r_dihedral_angle_1_deg 7.596 r_mcbond_it 5.798 r_mcbond_other 5.798 r_angle_refined_deg 1.481 r_angle_other_deg 0.864 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7866 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling