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Crystal structure of Canavalia brasiliensis seed lectin (ConBr) in complex with beta-d-ribofuranose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 1.8 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M HEPES, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.26 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.24 α = 90 b = 70.43 β = 90 c = 97.57 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 130 mm 2006-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.428 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 27.68 90.75 135906 12586 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 24.39 12200 11606 594 87.79 0.18528 0.18331 0.1967 0.22657 0.2378 RANDOM 21.553
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.78 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.772 r_dihedral_angle_3_deg 16.351 r_dihedral_angle_4_deg 15.463 r_dihedral_angle_1_deg 7.94 r_sphericity_free 7.049 r_scangle_it 4.502 r_sphericity_bonded 3.122 r_scbond_it 3.034 r_angle_refined_deg 2.142 r_mcangle_it 2.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.772 r_dihedral_angle_3_deg 16.351 r_dihedral_angle_4_deg 15.463 r_dihedral_angle_1_deg 7.94 r_sphericity_free 7.049 r_scangle_it 4.502 r_sphericity_bonded 3.122 r_scbond_it 3.034 r_angle_refined_deg 2.142 r_mcangle_it 2.126 r_rigid_bond_restr 1.967 r_mcbond_it 1.304 r_chiral_restr 0.134 r_bond_refined_d 0.02 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1775 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 19
Software Software Software Name Purpose iMOSFLM data reduction MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling