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FTase in complex with BMS analogue 16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2M MgCl2, 0.1M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.24 62.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.65 α = 90 b = 171.65 β = 90 c = 70.005 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 29.91 99.9 0.078 17.8 6.3 30875 30855 47.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.85 100 0.36 5 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3EU5 2.75 29.91 30875 29277 1557 99.97 0.17922 0.17671 0.22565 0.2222 RANDOM 42.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.18 0.35 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.689 r_dihedral_angle_4_deg 21.336 r_dihedral_angle_3_deg 19.313 r_dihedral_angle_1_deg 7.086 r_angle_other_deg 4.038 r_scangle_it 3.34 r_scbond_it 2.131 r_angle_refined_deg 1.883 r_mcangle_it 1.524 r_mcbond_it 0.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.689 r_dihedral_angle_4_deg 21.336 r_dihedral_angle_3_deg 19.313 r_dihedral_angle_1_deg 7.086 r_angle_other_deg 4.038 r_scangle_it 3.34 r_scbond_it 2.131 r_angle_refined_deg 1.883 r_mcangle_it 1.524 r_mcbond_it 0.817 r_symmetry_vdw_refined 0.31 r_symmetry_vdw_other 0.298 r_nbd_refined 0.264 r_nbd_other 0.255 r_nbtor_refined 0.208 r_xyhbond_nbd_refined 0.196 r_symmetry_hbond_refined 0.141 r_nbtor_other 0.111 r_chiral_restr 0.108 r_metal_ion_refined 0.076 r_bond_refined_d 0.02 r_gen_planes_other 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5853 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 85
Software Software Software Name Purpose MOSFLM data reduction PHASES phasing REFMAC refinement XDS data reduction XSCALE data scaling