Experiment: 4GPG

X-RAY DIFFRACTION - NEUTRON DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1ARC

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	8	297	20% w/v PEG 3350, 10mM Tris, HCl pH 8.0, 50% PEG 3350, HCl pD 8.0, VAPOR DIFFUSION, temperature 297K

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.31

Symmetry
Space Group	P 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	neutron	297	IMAGE PLATE		BIX-4, SILICON	2007-06-12	M	SINGLE WAVELENGTH
2	1	x-ray	297	IMAGE PLATE	MAC Science DIP-2000	double mirror	2007-05-01	M	SINGLE WAVELENGTH

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.98	50	89.4	0.161						4.87			11000
2	1.895	50	89.4	0.078						17.38			16128

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	R Merge I (Observed)	R-Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
2	1.88	1.95		0.198						5.95
2	1.95	2.03		0.17						7.2
2	2.03	2.12		0.135						9.3
2	2.12	2.23		0.121						10.5
2	2.23	2.37		0.112						11.6
2	2.37	2.55		0.099						13
2	2.55	2.81		0.086						15.3
2	2.81	3.21		0.075						17.8
2	3.21	4.05		0.062						23
2	4.05	80		0.062						23.3
2	2	2.07		0.319						2.5
2	2.07	2.15		0.342						2.9
2	2.15	2.25		0.33						3.2
2	2.25	2.37		0.329						2.9
2	2.37	2.52		0.288						3.3
2	2.52	2.71		0.289						3.7
2	2.71	2.99		0.247						4.5
2	2.99	3.42		0.18						6.7
2	3.42	4.31		0.139						9.7
2	4.31	50		0.124						10.7
1	2	2.07		0.319						2.51

Statistics
Diffraction ID	Structure Solution Method	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		1.895	20.358		2.08		16081	800	89.99		0.1493	0.1466	0.1526	0.2028	0.2077
NEUTRON DIFFRACTION		1.979	37.61				10998	554	69.97		0.1984	0.1952		0.2595

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.3375	1.7676	2.5966	4.4118	-2.9931	-2.0743
-0.058	-1.3327	0.8508	-1.2985	0.8387	-3.4569

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	16.315
f_angle_d	1.473
f_chiral_restr	0.096
f_bond_d	0.011
f_plane_restr	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1920
Nucleic Acid Atoms
Solvent Atoms	140
Heterogen Atoms

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

4GPG | pdb_00004gpg