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Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases (PMO-2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EJA PDB ENTRY 3EJA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 295 pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.08 40.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.17 α = 90 b = 41.99 β = 97.94 c = 69.25 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.95372 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 22.86 155130
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3EJA 1.1 22.86 149934 7547 96.6 0.133 0.132 0.1184 0.149 0.1323 RANDOM 15.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.87 -0.73 -3.44 -3.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.904 r_sphericity_free 25.803 r_sphericity_bonded 13.409 r_dihedral_angle_4_deg 10.418 r_dihedral_angle_3_deg 10.374 r_dihedral_angle_1_deg 6.286 r_angle_refined_deg 1.342 r_rigid_bond_restr 1.291 r_angle_other_deg 1.058 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.904 r_sphericity_free 25.803 r_sphericity_bonded 13.409 r_dihedral_angle_4_deg 10.418 r_dihedral_angle_3_deg 10.374 r_dihedral_angle_1_deg 6.286 r_angle_refined_deg 1.342 r_rigid_bond_restr 1.291 r_angle_other_deg 1.058 r_chiral_restr 0.094 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3272 Nucleic Acid Atoms Solvent Atoms 536 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction SCALA data scaling PHASES phasing