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Vaccinia D8L ectodomain structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ETQ PDB ENTRY 4ETQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 0.2 M sodium iodide, 20% PEG3350, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.8 31.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.281 α = 90 b = 71.281 β = 90 c = 44.415 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2011-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.100002 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 25.9 99.3675 0.068 33.6 2 40635 40635 16.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.45 100 0.63 2.7 2 2880
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ETQ 1.42 25.9 40635 1313 99.37 0.17434 0.17381 0.18987 0.1951 RANDOM 19.471
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.216 r_dihedral_angle_4_deg 23.823 r_dihedral_angle_3_deg 12.777 r_dihedral_angle_1_deg 6.046 r_scangle_it 3.241 r_scbond_it 2.098 r_mcangle_it 1.399 r_angle_refined_deg 1.349 r_mcbond_it 0.785 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.216 r_dihedral_angle_4_deg 23.823 r_dihedral_angle_3_deg 12.777 r_dihedral_angle_1_deg 6.046 r_scangle_it 3.241 r_scbond_it 2.098 r_mcangle_it 1.399 r_angle_refined_deg 1.349 r_mcbond_it 0.785 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1867 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 12
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling