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Crystal structure of arginine deiminase from Mycoplasma penetrans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 1.7 M Ammonium sulfate, pH 7 bis-tris 0.1M amb 15% glyOH, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.9 57.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.548 α = 90 b = 128.875 β = 91.41 c = 220.279 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD (111) monochromator and Pt coated mirrors in a Kirkpatrick-Baez configuration 2011-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 97.6 0.06 9.8 1.9 290893 290893
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.3 30 1971 288889 14608 96.9 0.2097 0.2106 0.2385 0.2396 34.7898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.937 -1.039 -5.811 4.874
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.931 c_mcangle_it 2.087 c_scbond_it 1.977 c_angle_d 1.325 c_mcbond_it 1.271 c_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 38004 Nucleic Acid Atoms Solvent Atoms 1615 Heterogen Atoms 12
Software Software Software Name Purpose SCALA data scaling MOLREP phasing CNS refinement PDB_EXTRACT data extraction MxCuBE data collection XDS data reduction