4E4J | pdb_00004e4j

Crystal structure of arginine deiminase from Mycoplasma penetrans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4e4jl_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
K	d4e4jk_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
J	d4e4jj_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
I	d4e4ji_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
H	d4e4jh_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
G	d4e4jg_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
F	d4e4jf_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
E	d4e4je_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
D	d4e4jd_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
C	d4e4jc_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
B	d4e4jb_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
A	d4e4ja_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
A	SCOP2 Family	Arginine deiminase	8077442	4001564	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Pentein	8077443	3000640	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Pkinase	e4e4jL2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
K	Pkinase	e4e4jK2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
J	Pkinase	e4e4jJ2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
I	Pkinase	e4e4jI2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
H	Pkinase	e4e4jH2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
G	Pkinase	e4e4jG2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
F	Pkinase	e4e4jF2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
E	Pkinase	e4e4jE2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
D	Pkinase	e4e4jD2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
C	Pkinase	e4e4jC2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
B	Pkinase	e4e4jB2	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Pkinase	ECOD (v294.2)
A	RNA_pol_Rpb2_45	e4e4jA1	A: beta barrels	X: Globin-like	H: Nucleoside diphosphate kinases	T: Nucleoside diphosphate kinases	F: RNA_pol_Rpb2_45	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
L	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
K	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
K	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
J	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
J	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
I	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
I	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
H	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
H	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
G	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
G	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
F	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
F	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
E	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
E	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
D	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
D	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
C	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
C	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
B	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
B	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
A	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
A	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02274	Arginine deiminase (ADI)	Arginine deiminase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Arginine deiminase	arginine deiminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003876	Arginine deiminase	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.