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Human histidine decarboxylase complex with Histidine methyl ester (HME)
Crystallization Crystal Properties Matthews coefficient Solvent content 2.99 58.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 215.163 α = 90 b = 112.723 β = 110.3 c = 171.393 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 354390
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 37.59 336219 17634 100 0.16338 0.16245 0.1678 0.181 0.1868 RANDOM 19.594
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.1 0.35 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.791 r_dihedral_angle_4_deg 15.411 r_dihedral_angle_3_deg 12.955 r_dihedral_angle_1_deg 5.691 r_scangle_it 2.141 r_scbond_it 1.266 r_angle_refined_deg 1.054 r_angle_other_deg 0.825 r_mcangle_it 0.801 r_mcbond_it 0.414
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.791 r_dihedral_angle_4_deg 15.411 r_dihedral_angle_3_deg 12.955 r_dihedral_angle_1_deg 5.691 r_scangle_it 2.141 r_scbond_it 1.266 r_angle_refined_deg 1.054 r_angle_other_deg 0.825 r_mcangle_it 0.801 r_mcbond_it 0.414 r_mcbond_other 0.088 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22817 Nucleic Acid Atoms Solvent Atoms 2039 Heterogen Atoms 162
Software Software Software Name Purpose REFMAC refinement