☰ Navigation Tabs
Crystal structure of human FPPS in complex with YS_04_70
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3N46 PDB ENTRY 3N46
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 30% PEG 300, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.43 49.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.23 α = 90 b = 111.23 β = 90 c = 67.724 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD RAYONIX MX-300 2011-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.9 0.048 0.048 50.4 14.3 36881 36881
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 100 0.391 0.391 8 14 1816
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3N46 1.85 50 34866 34866 1837 99.41 0.17545 0.17545 0.17409 0.1788 0.20176 0.2083 RANDOM 26.781
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 -1.72 3.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.486 r_dihedral_angle_4_deg 19.371 r_dihedral_angle_3_deg 13.823 r_scangle_it 5.549 r_dihedral_angle_1_deg 4.945 r_scbond_it 3.495 r_mcangle_it 2.342 r_angle_refined_deg 1.749 r_mcbond_it 1.381 r_angle_other_deg 1.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.486 r_dihedral_angle_4_deg 19.371 r_dihedral_angle_3_deg 13.823 r_scangle_it 5.549 r_dihedral_angle_1_deg 4.945 r_scbond_it 3.495 r_mcangle_it 2.342 r_angle_refined_deg 1.749 r_mcbond_it 1.381 r_angle_other_deg 1.111 r_mcbond_other 0.425 r_chiral_restr 0.129 r_bond_refined_d 0.026 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2742 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 29
Software Software Software Name Purpose MxDC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling