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Crystal structure of E. coli FabI in complex with NADH and CG400549
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QSG PDB ENTRY 1QSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10.5 0.2 M NH4AC, 0.1 M CAPS PH 10.5, 20% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.108 α = 90 b = 80.108 β = 90 c = 320.186 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.1 98.7 0.12 12.6 14.4 56987 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 96.6 1.1 2.3 12.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QSG 1.8 69.38 53952 2892 98.57 0.17639 0.17472 0.1871 0.20704 0.2162 RANDOM 33.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.17 -0.34 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.789 r_dihedral_angle_4_deg 19.895 r_dihedral_angle_3_deg 14.845 r_dihedral_angle_1_deg 7.207 r_scangle_it 4.868 r_scbond_it 3.318 r_mcangle_it 1.975 r_angle_refined_deg 1.601 r_mcbond_it 1.35 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.789 r_dihedral_angle_4_deg 19.895 r_dihedral_angle_3_deg 14.845 r_dihedral_angle_1_deg 7.207 r_scangle_it 4.868 r_scbond_it 3.318 r_mcangle_it 1.975 r_angle_refined_deg 1.601 r_mcbond_it 1.35 r_chiral_restr 0.095 r_gen_planes_refined 0.013 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3515 Nucleic Acid Atoms Solvent Atoms 355 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing