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Banyan peroxidase with glycosylation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 1 UL PROTEIN (30 MG/ML IN 20 MM TRIS/HCL, PH 8.0) PLUS 1 UL RESERVOIR (1.3 M AMMONIUM SULFATE, 1.0 M LITHIUMSULFATE), CRYOSOLUTION: RESERVOIR INCLUDING 20% GLYCEROL, XE-DERIVATIZATION: 1 MIN 4 MPA XE FOR CRYSTAL IN CRYOSOLUTION.
Crystal Properties Matthews coefficient Solvent content 1.8 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.115 α = 90 b = 73.115 β = 90 c = 164.596 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRROR 2011-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 1.0, 1.44163 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 20 99.5 0.05 22.9 7.4 60369 -3 35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.76 97.7 0.99 2.4 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.67 63.32 57238 3049 99.57 0.15776 0.15654 0.1591 0.18029 0.1823 RANDOM 41.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.05 0.11 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.137 r_dihedral_angle_4_deg 20.601 r_dihedral_angle_3_deg 12.264 r_dihedral_angle_1_deg 6.096 r_scbond_it 3.247 r_mcangle_it 2.845 r_angle_refined_deg 2.145 r_mcbond_it 1.943 r_chiral_restr 0.148 r_bond_refined_d 0.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.137 r_dihedral_angle_4_deg 20.601 r_dihedral_angle_3_deg 12.264 r_dihedral_angle_1_deg 6.096 r_scbond_it 3.247 r_mcangle_it 2.845 r_angle_refined_deg 2.145 r_mcbond_it 1.943 r_chiral_restr 0.148 r_bond_refined_d 0.021 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2315 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 302
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling Auto-Rickshaw phasing