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The molecular recognition of kink turn structure by the L7Ae class of proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RLG PDB ENTRY 1RLG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 2.3M AMMONIUM SULFATE, 0.1M HEPES-NA PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.78 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.92 α = 90 b = 61.92 β = 90 c = 130.97 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS PIXEL 2013-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 56 98 0.06 20 6.5 11309 2.9 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.41 92 0.56 2.9 3.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1RLG 2.33 55.979 1.34 11309 539 98.22 0.1814 0.1804 0.1847 0.2009 0.2056 39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.604 f_angle_d 1.061 f_chiral_restr 0.063 f_bond_d 0.007 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 900 Nucleic Acid Atoms 568 Solvent Atoms 53 Heterogen Atoms 5
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing